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Automake provides some minimal support for Java compilation with the
JAVA primary.
   
Any .java files listed in a _JAVA variable will be
compiled with JAVAC at build time.  By default, .java
files are not included in the distribution, you should use the
dist_ prefix to distribute them.
   
Here is a typical setup for distributing .java files and installing the .class files resulting from their compilation.
     javadir = $(datadir)/java
     dist_java_JAVA = a.java b.java ...
   
Currently Automake enforces the restriction that only one _JAVA
primary can be used in a given Makefile.am.  The reason for this
restriction is that, in general, it isn't possible to know which
.class files were generated from which .java files, so
it would be impossible to know which files to install where.  For
instance, a .java file can define multiple classes; the resulting
.class file names cannot be predicted without parsing the
.java file.
   
There are a few variables that are used when compiling Java sources:
JAVACJAVACFLAGSAM_JAVACFLAGSJAVACFLAGS, should be used when it is necessary to put Java
compiler flags into Makefile.am.
     JAVAROOTjavac.  It defaults to ‘$(top_builddir)’.
     CLASSPATH_ENVsh expression that is used to set the
CLASSPATH environment variable on the javac command line. 
(In the future we will probably handle class path setting differently.)